1. Vroomans RMA, Colizzi ES. Evolution of selfish multicellularity: collective organisation of individual spatio-temporal regulatory strategies. BMC Ecology and Evolution. 2023 Jul 19;23(1):35.
2. Colizzi ES, van Dijk B, Merks RM, Rozen DE, Vroomans RM. Evolution of genome fragility enables microbial division of labor. Molecular Systems Biology. 2023;19(3):e11353.
3. Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, et al. Towards evolutionary predictions: Current promises and challenges. Evolutionary applications. 2023;16(1):3–21.
4. Colizzi ES, Hogeweg P, Vroomans RMA. Modelling the evolution of novelty: a review. Essays Biochem. 2022 Dec 8;66(6):727–35.
5. McGregor AP, Buffry AD, Vroomans RM. A special issue of Essays in Biochemistry on evolutionary developmental biology. Vol. 66, Essays in Biochemistry. Portland Press Ltd.; 2022. p. 703–5.
6. Vroomans R, Helariutta Y. In preprints: new insights into root stem cells and their diversity. Development. 2022;149(13):dev201005.
7. Vroomans RMA, Ten Tusscher KHWJ, Nuño de la Rosa L, Müller GB. Modeling Evolution of Developmental Gene Regulatory Networks [Internet]. Springer Cham; 2021 [cited 2023 Sep 10]. p. 1013–29. Available from: https://dspace.library.uu.nl/handle/1874/415053
8. Hagolani PF, Zimm R, Vroomans R, Salazar-Ciudad I. On the evolution and development of morphological complexity: A view from gene regulatory networks. PLOS Computational Biology. 2021 Feb 24;17(2):e1008570.
9. Colizzi ES, Vroomans RM, Merks RM. Evolution of multicellularity by collective integration of spatial information. Goldstein RE, Walczak AM, editors. eLife. 2020 Oct 16;9:e56349.
10. Ritmahan W, Kesmir C, Vroomans RM. Revealing factors determining immunodominant responses against dominant epitopes. Immunogenetics. 2020;72:109–18.
11. Bagaev DV, Vroomans RM, Samir J, Stervbo U, Rius C, Dolton G, et al. VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Research. 2020;48(D1):D1057–62.
12. Li XR, Vroomans RM, Fox S, Grieneisen VA, Østergaard L, Marée AF. Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening. Molecular plant. 2019;12(6):863–78.
13. Shugay M, Bagaev DV, Zvyagin IV, Vroomans RM, Crawford JC, Dolton G, et al. VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. Nucleic acids research. 2018;46(D1):D419–27.
14. Vroomans RMA, Hogeweg P, Ten Tusscher KHWJ. Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics. Evodevo. 2018;9:24.
15. Vroomans RM, Ten Tusscher KH. Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences. Developmental biology. 2017;427(1):21–34.
16. Vroomans RMA, Hogeweg P, ten Tusscher KHWJ. In silico evo-devo: reconstructing stages in the evolution of animal segmentation. EvoDevo. 2016 Aug 1;7(1):14.
17. Vroomans RM, Hogeweg P, ten Tusscher KH. Segment-specific adhesion as a driver of convergent extension. PLoS computational biology. 2015;11(2):e1004092.
18. Vroomans RM, Marée AF, De Boer RJ, Beltman JB. Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens. PLoS computational biology. 2012;8(11):e1002763.