Hagolani, Pascal F; Zimm, Roland; Vroomans, Renske; Salazar-Ciudad, Isaac On the evolution and development of morphological complexity: A view from gene regulatory networks Journal Article PLoS computational biology, 17 (2), pp. e1008570, 2021. Links | BibTeX @article{hagolani2021evolution,
title = {On the evolution and development of morphological complexity: A view from gene regulatory networks},
author = {Pascal F Hagolani and Roland Zimm and Renske Vroomans and Isaac Salazar-Ciudad},
url = {https://doi.org/10.1371/journal.pcbi.1008570},
doi = {10.1371/journal.pcbi.1008570},
year = {2021},
date = {2021-01-01},
journal = {PLoS computational biology},
volume = {17},
number = {2},
pages = {e1008570},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Colizzi, Enrico Sandro; Vroomans, Renske MA; Rozen, Daniel E; Merks, Roeland MH; van Dijk, Bram Evolution of genome fragility enables microbial division of labor Journal Article bioRxiv, 2021. Links | BibTeX @article{colizzi2021evolution,
title = {Evolution of genome fragility enables microbial division of labor},
author = {Enrico Sandro Colizzi and Renske MA Vroomans and Daniel E Rozen and Roeland MH Merks and Bram van Dijk},
url = {https://doi.org/10.7554/eLife.56349},
doi = {10.7554/eLife.56349},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Bagaev, Dmitry V; Vroomans, Renske MA; Samir, Jerome; Stervbo, Ulrik; Rius, Cristina; Dolton, Garry; Greenshields-Watson, Alexander; Attaf, Meriem; Egorov, Evgeny S; Zvyagin, Ivan V; others, VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium Journal Article Nucleic Acids Research, 48 (D1), pp. D1057–D1062, 2020. Links | BibTeX @article{bagaev2020vdjdb,
title = {VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium},
author = {Dmitry V Bagaev and Renske MA Vroomans and Jerome Samir and Ulrik Stervbo and Cristina Rius and Garry Dolton and Alexander Greenshields-Watson and Meriem Attaf and Evgeny S Egorov and Ivan V Zvyagin and others},
url = {https://doi.org/10.1093/nar/gkz874},
doi = {10.1093/nar/gkz874},
year = {2020},
date = {2020-01-01},
journal = {Nucleic Acids Research},
volume = {48},
number = {D1},
pages = {D1057--D1062},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Ritmahan, Wannisa; Kesmir, Can; Vroomans, Renske MA Revealing factors determining immunodominant responses against dominant epitopes Journal Article Immunogenetics, 72 (1), pp. 109–118, 2020. Links | BibTeX @article{ritmahan2020revealing,
title = {Revealing factors determining immunodominant responses against dominant epitopes},
author = {Wannisa Ritmahan and Can Kesmir and Renske MA Vroomans},
url = {https://doi.org/10.1007/s00251-019-01134-9},
doi = {10.1007/s00251-019-01134-9},
year = {2020},
date = {2020-01-01},
journal = {Immunogenetics},
volume = {72},
number = {1},
pages = {109--118},
publisher = {Springer Berlin Heidelberg},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Colizzi, Enrico Sandro; Vroomans, Renske MA; Merks, Roeland MH Evolution of multicellularity by collective integration of spatial information Journal Article Elife, 9 , pp. e56349, 2020. BibTeX @article{colizzi2020evolution,
title = {Evolution of multicellularity by collective integration of spatial information},
author = {Enrico Sandro Colizzi and Renske MA Vroomans and Roeland MH Merks},
year = {2020},
date = {2020-01-01},
journal = {Elife},
volume = {9},
pages = {e56349},
publisher = {eLife Sciences Publications Limited},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Li, Xin-Ran; Vroomans, Renske MA; Fox, Samantha; ^o, Ver; Østergaard, Lars; Marée, Athanasius FM Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening Journal Article Molecular plant, 12 (6), pp. 863–878, 2019. Links | BibTeX @article{li2019systems,
title = {Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening},
author = {Xin-Ran Li and Renske MA Vroomans and Samantha Fox and Ver{^o}nica A Grieneisen and Lars Østergaard and Athanasius FM Marée},
url = {https://doi.org/10.1016/j.molp.2019.05.003},
doi = {10.1016/j.molp.2019.05.003},
year = {2019},
date = {2019-01-01},
journal = {Molecular plant},
volume = {12},
number = {6},
pages = {863--878},
publisher = {Cell Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske MA; ten Tusscher, Kirsten HWJ Modeling Evolution of Developmental Gene Regulatory Networks Book Chapter Evolutionary Developmental Biology: A Reference Guide, pp. 1–17, Springer, 2018. BibTeX @inbook{vroomans2018modeling,
title = {Modeling Evolution of Developmental Gene Regulatory Networks},
author = {Renske MA Vroomans and Kirsten HWJ ten Tusscher},
year = {2018},
date = {2018-01-01},
booktitle = {Evolutionary Developmental Biology: A Reference Guide},
journal = {Evolutionary Developmental Biology: A Reference Guide},
pages = {1--17},
publisher = {Springer},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
Shugay, Mikhail; Bagaev, Dmitriy V; Zvyagin, Ivan V; Vroomans, Renske M; Crawford, Jeremy Chase; Dolton, Garry; Komech, Ekaterina A; Sycheva, Anastasiya L; Koneva, Anna E; Egorov, Evgeniy S; others, VDJdb: a curated database of T-cell receptor sequences with known antigen specificity Journal Article Nucleic acids research, 46 (D1), pp. D419–D427, 2018. Links | BibTeX @article{shugay2018vdjdb,
title = {VDJdb: a curated database of T-cell receptor sequences with known antigen specificity},
author = {Mikhail Shugay and Dmitriy V Bagaev and Ivan V Zvyagin and Renske M Vroomans and Jeremy Chase Crawford and Garry Dolton and Ekaterina A Komech and Anastasiya L Sycheva and Anna E Koneva and Evgeniy S Egorov and others},
url = {https://doi.org/10.1093/nar/gkx760},
doi = {10.1093/nar/gkx760},
year = {2018},
date = {2018-01-01},
journal = {Nucleic acids research},
volume = {46},
number = {D1},
pages = {D419--D427},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske M A; Hogeweg, Paulien; Tusscher, Kirsten Ten H W J Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics Journal Article EvoDevo, 9 (24), 2018. Links | BibTeX @article{vroomans2018around,
title = {Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics},
author = {Renske M A Vroomans and Paulien Hogeweg and Kirsten H W J Ten Tusscher},
url = {https://doi.org/10.1186/s13227-018-0113-2},
doi = {10.1186/s13227-018-0113-2},
year = {2018},
date = {2018-01-01},
journal = {EvoDevo},
volume = {9},
number = {24},
publisher = {Springer Nature},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske MA; Tusscher, Kirsten HWJ Ten Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences Journal Article Developmental biology, 427 (1), pp. 21–34, 2017. Links | BibTeX @article{vroomans2017modelling,
title = {Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences},
author = {Renske MA Vroomans and Kirsten HWJ Ten Tusscher},
url = {https://doi.org/10.1016/j.ydbio.2017.05.010},
doi = {10.1016/j.ydbio.2017.05.010},
year = {2017},
date = {2017-01-01},
journal = {Developmental biology},
volume = {427},
number = {1},
pages = {21--34},
publisher = {Academic Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske MA Of clocks and waves, stripes and shapes: evo-devo models of sequential segmentation PhD Thesis Utrecht University, 2017. Links | BibTeX @phdthesis{vroomans2017clocks,
title = {Of clocks and waves, stripes and shapes: evo-devo models of sequential segmentation},
author = {Renske MA Vroomans},
url = {https://dspace.library.uu.nl/handle/1874/345720},
year = {2017},
date = {2017-01-01},
school = {Utrecht University},
keywords = {},
pubstate = {published},
tppubtype = {phdthesis}
}
|
Vroomans, Renske MA; Hogeweg, Paulien; Tusscher, Kirsten HWJ Ten In silico evo-devo: reconstructing stages in the evolution of animal segmentation Journal Article EvoDevo, 7 (1), pp. 1–20, 2016. Links | BibTeX @article{vroomans2016silico,
title = {In silico evo-devo: reconstructing stages in the evolution of animal segmentation},
author = {Renske MA Vroomans and Paulien Hogeweg and Kirsten HWJ Ten Tusscher},
url = {https://doi.org/10.1186/s13227-016-0052-8},
doi = {10.1186/s13227-016-0052-8},
year = {2016},
date = {2016-01-01},
journal = {EvoDevo},
volume = {7},
number = {1},
pages = {1--20},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske MA; Hogeweg, Paulien; ten Tusscher, Kirsten HWJ Segment-specific adhesion as a driver of convergent extension Journal Article PLoS computational biology, 11 (2), pp. e1004092, 2015. Links | BibTeX @article{vroomans2015segment,
title = {Segment-specific adhesion as a driver of convergent extension},
author = {Renske MA Vroomans and Paulien Hogeweg and Kirsten HWJ ten Tusscher},
url = {https://doi.org/10.1371/journal.pcbi.1004092},
doi = {10.1371/journal.pcbi.1004092},
year = {2015},
date = {2015-01-01},
journal = {PLoS computational biology},
volume = {11},
number = {2},
pages = {e1004092},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Vroomans, Renske MA; Marée, Athanasius FM; Boer, Rob De J; Beltman, Joost B Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens Journal Article PLoS Comput Biol, 8 (11), pp. e1002763, 2012. Links | BibTeX @article{vroomans2012chemotactic,
title = {Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens},
author = {Renske MA Vroomans and Athanasius FM Marée and Rob J De Boer and Joost B Beltman},
url = {https://doi.org/10.1371/journal.pcbi.1002763},
doi = {10.1371/journal.pcbi.1002763},
year = {2012},
date = {2012-01-01},
journal = {PLoS Comput Biol},
volume = {8},
number = {11},
pages = {e1002763},
publisher = {Public Library of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|