Publications

Hagolani, Pascal F; Zimm, Roland; Vroomans, Renske; Salazar-Ciudad, Isaac

On the evolution and development of morphological complexity: A view from gene regulatory networks Journal Article

PLoS computational biology, 17 (2), pp. e1008570, 2021.

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Colizzi, Enrico Sandro; Vroomans, Renske MA; Rozen, Daniel E; Merks, Roeland MH; van Dijk, Bram

Evolution of genome fragility enables microbial division of labor Journal Article

bioRxiv, 2021.

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Bagaev, Dmitry V; Vroomans, Renske MA; Samir, Jerome; Stervbo, Ulrik; Rius, Cristina; Dolton, Garry; Greenshields-Watson, Alexander; Attaf, Meriem; Egorov, Evgeny S; Zvyagin, Ivan V; others,

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium Journal Article

Nucleic Acids Research, 48 (D1), pp. D1057–D1062, 2020.

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Ritmahan, Wannisa; Kesmir, Can; Vroomans, Renske MA

Revealing factors determining immunodominant responses against dominant epitopes Journal Article

Immunogenetics, 72 (1), pp. 109–118, 2020.

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Colizzi, Enrico Sandro; Vroomans, Renske MA; Merks, Roeland MH

Evolution of multicellularity by collective integration of spatial information Journal Article

Elife, 9 , pp. e56349, 2020.

BibTeX

Li, Xin-Ran; Vroomans, Renske MA; Fox, Samantha; ^o, Ver; Østergaard, Lars; Marée, Athanasius FM

Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening Journal Article

Molecular plant, 12 (6), pp. 863–878, 2019.

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Vroomans, Renske MA; ten Tusscher, Kirsten HWJ

Modeling Evolution of Developmental Gene Regulatory Networks Book Chapter

Evolutionary Developmental Biology: A Reference Guide, pp. 1–17, Springer, 2018.

BibTeX

Shugay, Mikhail; Bagaev, Dmitriy V; Zvyagin, Ivan V; Vroomans, Renske M; Crawford, Jeremy Chase; Dolton, Garry; Komech, Ekaterina A; Sycheva, Anastasiya L; Koneva, Anna E; Egorov, Evgeniy S; others,

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity Journal Article

Nucleic acids research, 46 (D1), pp. D419–D427, 2018.

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Vroomans, Renske M A; Hogeweg, Paulien; Tusscher, Kirsten Ten H W J

Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics Journal Article

EvoDevo, 9 (24), 2018.

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Vroomans, Renske MA; Tusscher, Kirsten HWJ Ten

Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences Journal Article

Developmental biology, 427 (1), pp. 21–34, 2017.

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Vroomans, Renske MA

Of clocks and waves, stripes and shapes: evo-devo models of sequential segmentation PhD Thesis

Utrecht University, 2017.

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Vroomans, Renske MA; Hogeweg, Paulien; Tusscher, Kirsten HWJ Ten

In silico evo-devo: reconstructing stages in the evolution of animal segmentation Journal Article

EvoDevo, 7 (1), pp. 1–20, 2016.

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Vroomans, Renske MA; Hogeweg, Paulien; ten Tusscher, Kirsten HWJ

Segment-specific adhesion as a driver of convergent extension Journal Article

PLoS computational biology, 11 (2), pp. e1004092, 2015.

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Vroomans, Renske MA; Marée, Athanasius FM; Boer, Rob De J; Beltman, Joost B

Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens Journal Article

PLoS Comput Biol, 8 (11), pp. e1002763, 2012.

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