1. Vroomans RMA, Colizzi ES. 2023. Evolution of selfish multicellularity: collective organisation of individual spatio-temporal regulatory strategies. BMC Ecology and Evolution. 23 (35).
2. Colizzi ES, van Dijk B, Merks RM, Rozen DE, Vroomans RMA. 2023. Evolution of genome fragility enables microbial division of labor. Molecular Systems Biology. 19 (3), e11353.
3. Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, et al. 2023. Towards evolutionary predictions: Current promises and challenges. Evolutionary applications. 16 (1), p3–21.
4. Colizzi ES, Hogeweg P, Vroomans RMA. 2022. Modelling the evolution of novelty: a review. Essays in Biochemistry. 66 (6), p727-735.
5. McGregor AP, Buffry AD, Vroomans RMA. A special issue of Essays in Biochemistry on evolutionary developmental biology. 2022 Essays in Biochemistry. 66 (6), p703-705.
6. Vroomans RMA, Helariutta Y. 2022. In preprints: new insights into root stem cells and their diversity. Development. 149 (13), dev201005.
7. Vroomans RMA, Ten Tusscher KHWJ, 2021. Chapter: Modeling Evolution of Developmental Gene Regulatory Networks. In Evolutionary Developmental Biology: A Reference Guide, p1013-1029, Springer Reference
8. Hagolani PF, Zimm R, Vroomans RMA, Salazar-Ciudad I. 2021. On the evolution and development of morphological complexity: A view from gene regulatory networks. PLOS Computational Biology. 17(2), e1008570.
9. Colizzi ES, Vroomans RMA, Merks RMH. 2020. Evolution of multicellularity by collective integration of spatial information. ELife 9, e56349.
10. Ritmahan W, Kesmir C, Vroomans RMA. 2020. Revealing factors determining immunodominant responses against dominant epitopes. Immunogenetics. 72 (1), p109-118.
11. Bagaev DV, Vroomans RMA, Samir J, Stervbo U, Rius C, Dolton G, et al. 2020. VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Research 48 (D1), D1057-D1062.
12. Li XR, Vroomans RMA, Fox S, Grieneisen VA, Østergaard L, Marée AFM. 2019. Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening. Molecular plant. 12(6), p863–78.
13. Shugay M, Bagaev DV, Zvyagin IV, Vroomans RM, Crawford JC, Dolton G, et al. 2018. VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. Nucleic acids research 46 (D1), D419-D427.
14. Vroomans RMA, Hogeweg P, Ten Tusscher KHWJ. 2018. Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics. Evodevo. 9 (24).
15. Vroomans RMA, Ten Tusscher KHWJ. 2017. Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences. Developmental biology. 427 (1), p21–34.
16. Vroomans RMA, Hogeweg P, ten Tusscher KHWJ. 2016.In silico evo-devo: reconstructing stages in the evolution of animal segmentation. EvoDevo. 7 (14).
17. Vroomans RMA, Hogeweg P, ten Tusscher KHWJ. 2015. Segment-specific adhesion as a driver of convergent extension. PLoS computational biology. 11 (2), e1004092.
18. Vroomans RMA, Marée AFM, De Boer RJ, Beltman JB. 2012 Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens. PLoS computational biology. 8 (11), e1002763.